Check_crtm make check failure

muzi · March 13, 2023, 3:20pm

Hey there, attempting to get CRTM v2.4.0 running for a client at NOAA. I’ve configured netCDF4 / HDF5 and made it to the final step of the installation user guide (make check) without error until seeing the following. Not sure how to proceed… Thanks! -Kyle

========================================
Running test: big-endian I/O on little-endian platform…

 **********************************************************
                         check_crtm

  Check/example program for the CRTM Forward and K-Matrix 
  functions using big_endian coefficient datafiles

  CRTM Version: v2.4.0-alpha
 **********************************************************


 Initializing the CRTM...

Load the cloud coefficients:
…Cloud model: CRTM
…CloudCoeff file: coefficients/big_endian/CloudCoeff.bin
Load the aerosol coefficients:
…Aerosol model: GOCART
…AerosolCoeff file: coefficients/big_endian/AerosolCoeff.bin

 Processing a total of 421 channels...
   399 from cris399_npp
   22 from atms_npp

 Calling the CRTM functions for cris399_npp...

*** Error in `./check_crtm’: double free ======= Backtrace: =========
/lib64/libc.so.6(+0x81329)[0x7f69b6ea7329]
./check_crtm[0x47d360]
./check_crtm[0x47f272]
./check_crtm[0x410276]
./check_crtm[0x404591]
/lib64/libc.so.6(__libc_start_main+0xf5)[0x7f69b6e48 ./check_crtm[0x4045c1]
======= Memory map: ========
00400000-0080e000 r-xp 00000000 00:35 4300225569 00a0d000-00a0e000 r–p 0040d000 00:35 4300225569 00a0e000-00a12000 rw-p 0040e000 00:35 4300225569 00a12000-00a16000 rw-p 00000000 00:00 0
0150b000-024d5000 rw-p 00000000 00:00 0 7f6998000000-7f6998025000 rw-p 00000000 00:00 0
7f6998025000-7f699c000000 —p 00000000 00:00 0
7f699c000000-7f699c021000 rw-p 00000000 00:00 0
7f699c021000-7f69a0000000 —p 00000000 00:00 0
7f69a0000000-7f69a0025000 rw-p 00000000 00:00 0
7f69a0025000-7f69a4000000 —p 00000000 00:00 0
7f69a8000000-7f69a8021000 rw-p 00000000 00:00 0
7f69a8021000-7f69ac000000 —p 00000000 00:00 0
7f69aea41000-7f69aea42000 —p 00000000 00:00 0
7f69aea42000-7f69af242000 rw-p 00000000 00:00 0
7f69af242000-7f69af243000 —p 00000000 00:00 0
7f69af243000-7f69afa43000 rw-p 00000000 00:00 0
7f69afa43000-7f69afa44000 —p 00000000 00:00 0
7f69afa44000-7f69b1f8b000 rw-p 00000000 00:00 0
7f69b1f8b000-7f69b1f8d000 r-xp 00000000 fd:00 1612 7f69b1f8d000-7f69b218c000 —p 00002000 fd:00 1612 7f69b218c000-7f69b218d000 r–p 00001000 fd:00 1612 7f69b218d000-7f69b218e000 rw-p 00002000 fd:00 1612 7f69b218e000-7f69b21ee000 r-xp 00000000 fd:00 1752 7f69b21ee000-7f69b23ee000 —p 00060000 fd:00 1752 7f69b23ee000-7f69b23ef000 r–p 00060000 fd:00 1752 7f69b23ef000-7f69b23f0000 rw-p 00061000 fd:00 1752 7f69b23f0000-7f69b23f8000 r-xp 00000000 fd:00 850067 7f69b23f8000-7f69b25f7000 —p 00008000 fd:00 850067 7f69b25f7000-7f69b25f8000 r–p 00007000 fd:00 850067 7f69b25f8000-7f69b25f9000 rw-p 00008000 fd:00 850067 7f69b25f9000-7f69b2627000 rw-p 00000000 00:00 0
7f69b2627000-7f69b264b000 r-xp 00000000 fd:00 3650 7f69b264b000-7f69b284a000 —p 00024000 fd:00 3650 7f69b284a000-7f69b284b000 r–p 00023000 fd:00 3650 7f69b284b000-7f69b284c000 rw-p 00024000 fd:00 3650 7f69b284c000-7f69b284e000 rw-p 00000000 00:00 0
7f69b284e000-7f69b286a000 r-xp 00000000 fd:00 385312 7f69b286a000-7f69b2a69000 —p 0001c000 fd:00 385312 7f69b2a69000-7f69b2a6a000 r–p 0001b000 fd:00 385312 7f69b2a6a000-7f69b2a6b000 rw-p 0001c000 fd:00 385312 7f69b2a6b000-7f69b2a81000 r-xp 00000000 fd:00 1182361 7f69b2a81000-7f69b2c81000 —p 00016000 fd:00 1182361 7f69b2c81000-7f69b2c82000 r–p 00016000 fd:00 1182361 7f69b2c82000-7f69b2c83000 rw-p 00017000 fd:00 1182361 7f69b2c83000-7f69b2c85000 rw-p 00000000 00:00 0
7f69b2c85000-7f69b2c88000 r-xp 00000000 fd:00 35425 7f69b2c88000-7f69b2e87000 —p 00003000 fd:00 35425 7f69b2e87000-7f69b2e88000 r–p 00002000 fd:00 35425 7f69b2e88000-7f69b2e89000 rw-p 00003000 fd:00 35425 7f69b2e89000-7f69b2e97000 r-xp 00000000 fd:00 580340 7f69b2e97000-7f69b3097000 —p 0000e000 fd:00 580340 7f69b3097000-7f69b3098000 r–p 0000e000 fd:00 580340 7f69b3098000-7f69b3099000 rw-p 0000f000 fd:00 580340 7f69b3099000-7f69b30a0000 r-xp 00000000 fd:00 1182363 7f69b30a0000-7f69b329f000 —p 00007000 fd:00 1182363 7f69b329f000-7f69b32a0000 r–p 00006000 fd:00 1182363 7f69b32a0000-7f69b32a1000 rw-p 00007000 fd:00 1182363 7f69b32a1000-7f69b34d8000 r-xp 00000000 fd:00 86317 7f69b34d8000-7f69b36d7000 —p 00237000 fd:00 86317 7f69b36d7000-7f69b36f3000 r–p 00236000 fd:00 86317 7f69b36f3000-7f69b3700000 rw-p 00252000 fd:00 86317 7f69b3700000-7f69b3704000 rw-p 00000000 00:00 0
7f69b3704000-7f69b376b000 r-xp 00000000 fd:00 532643 7f69b376b000-7f69b396b000 —p 00067000 fd:00 532643 7f69b396b000-7f69b396f000 r–p 00067000 fd:00 532643 7f69b396f000-7f69b3976000 rw-p 0006b000 fd:00 532643 7f69b3976000-7f69b39c8000 r-xp 00000000 fd:00 849999 7f69b39c8000-7f69b3bc8000 —p 00052000 fd:00 849999 7f69b3bc8000-7f69b3bca000 r–p 00052000 fd:00 849999 7f69b3bca000-7f69b3bcb000 rw-p 00054000 fd:00 849999 7f69b3bcb000-7f69b3bd9000 r-xp 00000000 fd:00 524648 7f69b3bd9000-7f69b3dd8000 —p 0000e000 fd:00 524648 7f69b3dd8000-7f69b3dd9000 r–p 0000d000 fd:00 524648 7f69b3dd9000-7f69b3dda000 rw-p 0000e000 fd:00 524648 7f69b3dda000-7f69b3ddd000 r-xp 00000000 fd:00 1712 7f69b3ddd000-7f69b3fdc000 —p 00003000 fd:00 1712 7f69b3fdc000-7f69b3fdd000 r–p 00002000 fd:00 1712 7f69b3fdd000-7f69b3fde000 rw-p 00003000 fd:00 1712 7f69b3fde000-7f69b400f000 r-xp 00000000 fd:00 580316 7f69b400f000-7f69b420e000 —p 00031000 fd:00 580316 7f69b420e000-7f69b4210000 r–p 00030000 fd:00 580316 7f69b4210000-7f69b4211000 rw-p 00032000 fd:00 580316 7f69b4211000-7f69b42ea000 r-xp 00000000 fd:00 71261 7f69b42ea000-7f69b44e9000 —p 000d9000 fd:00 71261 7f69b44e9000-7f69b44f7000 r–p 000d8000 fd:00 71261 7f69b44f7000-7f69b44fa000 rw-p 000e6000 fd:00 71261 7f69b44fa000-7f69b4544000 r-xp 00000000 fd:00 385801 7f69b4544000-7f69b4744000 —p 0004a000 fd:00 385801 7f69b4744000-7f69b4745000 r–p 0004a000 fd:00 385801 7f69b4745000-7f69b4747000 rw-p 0004b000 fd:00 385801 7f69b4747000-7f69b4781000 r-xp 00000000 fd:00 1503835 7f69b4781000-7f69b4981000 —p 0003a000 fd:00 1503835 7f69b4981000-7f69b4982000 r–p 0003a000 fd:00 1503835 7f69b4982000-7f69b4984000 rw-p 0003b000 fd:00 1503835 7f69b4984000-7f69b4986000 rw-p 00000000 00:00 0
7f69b4986000-7f69b498a000 r-xp 00000000 fd:00 1503847 7f69b498a000-7f69b4b89000 —p 00004000 fd:00 1503847 7f69b4b89000-7f69b4b8a000 r–p 00003000 fd:00 1503847 7f69b4b8a000-7f69b4b8b000 rw-p 00004000 fd:00 1503847 7f69b4b8b000-7f69b4b8e000 r-xp 00000000 fd:00 466921 7f69b4b8e000-7f69b4d8d000 —p 00003000 fd:00 466921 7f69b4d8d000-7f69b4d8e000 r–p 00002000 fd:00 466921 7f69b4d8e000-7f69b4d8f000 rw-p 00003000 fd:00 466921 7f69b4d8f000-7f69b4db8000 r-xp 00000000 fd:00 473532 7f69b4db8000-7f69b4fb7000 —p 00029000 fd:00 473532 7f69b4fb7000-7f69b4fbe000 r–p 00028000 fd:00 473532 7f69b4fbe000-7f69b4fbf000 rw-p 0002f000 fd:00 473532 7f69b4fbf000-7f69b50f0000 r-xp 00000000 fd:00 847599 7f69b50f0000-7f69b52f0000 —p 00131000 fd:00 847599 7f69b52f0000-7f69b52f5000 r–p 00131000 fd:00 847599 7f69b52f5000-7f69b52f8000 rw-p 00136000 fd:00 847599 7f69b52f8000-7f69b52f9000 rw-p 00000000 00:00 0
7f69b52f9000-7f69b531e000 r-xp 00000000 fd:00 847600 7f69b531e000-7f69b551d000 —p 00025000 fd:00 847600 7f69b551d000-7f69b5520000 r–p 00024000 fd:00 847600 7f69b5520000-7f69b5521000 rw-p 00027000 fd:00 847600 7f69b5521000-7f69b5580000 r-xp 00000000 fd:00 847602 7f69b5580000-7f69b5780000 —p 0005f000 fd:00 847602 7f69b5780000-7f69b5784000 r–p 0005f000 fd:00 847602 7f69b5784000-7f69b5785000 rw-p 00063000 fd:00 847602 7f69b5785000-7f69b5786000 rw-p 00000000 00:00 0
7f69b5786000-7f69b57b1000 r-xp 00000000 fd:00 1254139 7f69b57b1000-7f69b59b1000 —p 0002b000 fd:00 1254139 7f69b59b1000-7f69b59b2000 r–p 0002b000 fd:00 1254139 7f69b59b2000-7f69b59b3000 rw-p 0002c000 fd:00 1254139 7f69b59b3000-7f69b59e5000 r-xp 00000000 fd:00 35235 7f69b59e5000-7f69b5be4000 —p 00032000 fd:00 35235 7f69b5be4000-7f69b5be5000 r–p 00031000 fd:00 35235 7f69b5be5000-7f69b5be6000 rw-p 00032000 fd:00 35235 7f69b5be6000-7f69b5c0b000 r-xp 00000000 fd:00 3658 7f69b5c0b000-7f69b5e0a000 —p 00025000 fd:00 3658 7f69b5e0a000-7f69b5e0b000 r–p 00024000 fd:00 3658 7f69b5e0b000-7f69b5e0c000 rw-p 00025000 fd:00 3658 7f69b5e0c000-7f69b5e13000 r-xp 00000000 fd:00 580337 7f69b5e13000-7f69b6012000 —p 00007000 fd:00 580337 7f69b6012000-7f69b6013000 r–p 00006000 fd:00 580337 7f69b6013000-7f69b6014000 rw-p 00007000 fd:00 580337 7f69b6014000-7f69b607a000 r-xp 00000000 fd:00 1254138 7f69b607a000-7f69b627a000 —p 00066000 fd:00 1254138 7f69b627a000-7f69b627c000 r–p 00066000 fd:00 1254138 7f69b627c000-7f69b627d000 rw-p 00068000 fd:00 1254138 7f69b627d000-7f69b627e000 rw-p 00000000 00:00 0
7f69b627e000-7f69b63dc000 r-xp 00000000 fd:00 361900 7f69b63dc000-7f69b65dc000 —p 0015e000 fd:00 361900 7f69b65dc000-7f69b65e4000 r–p 0015e000 fd:00 361900 7f69b65e4000-7f69b65e6000 rw-p 00166000 fd:00 361900 7f69b65e6000-7f69b65e8000 rw-p 00000000 00:00 0
7f69b65e8000-7f69b65ea000 r-xp 00000000 fd:00 889167 7f69b65ea000-7f69b67e9000 —p 00002000 fd:00 889167 7f69b67e9000-7f69b67ea000 r–p 00001000 fd:00 889167 7f69b67ea000-7f69b67eb000 rw-p 00002000 fd:00 889167 7f69b67eb000-7f69b67ed000 r-xp 00000000 fd:00 850112 7f69b67ed000-7f69b69ed000 —p 00002000 fd:00 850112 7f69b69ed000-7f69b69ee000 r–p 00002000 fd:00 850112 7f69b69ee000-7f69b69ef000 rw-p 00003000 fd:00 850112 7f69b69ef000-7f69b6a04000 r-xp 00000000 fd:00 1157612 7f69b6a04000-7f69b6c03000 —p 00015000 fd:00 1157612 7f69b6c03000-7f69b6c04000 r–p 00014000 fd:00 1157612 7f69b6c04000-7f69b6c05000 rw-p 00015000 fd:00 1157612 7f69b6c05000-7f69b6c24000 r-xp 00000000 fd:00 17215664 7f69b6c24000-7f69b6e23000 —p 0001f000 fd:00 17215664 7f69b6e23000-7f69b6e24000 r–p 0001e000 fd:00 17215664 7f69b6e24000-7f69b6e25000 rw-p 0001f000 fd:00 17215664 7f69b6e25000-7f69b6e26000 rw-p 00000000 00:00 0
7f69b6e26000-7f69b6fea000 r-xp 00000000 fd:00 1650 7f69b6fea000-7f69b71e9000 —p 001c4000 fd:00 1650 7f69b71e9000-7f69b71ed000 r–p 001c3000 fd:00 1650 7f69b71ed000-7f69b71ef000 rw-p 001c7000 fd:00 1650 7f69b71ef000-7f69b71f4000 rw-p 00000000 00:00 0
7f69b71f4000-7f69b720b000 r-xp 00000000 fd:00 1182358 7f69b720b000-7f69b740a000 —p 00017000 fd:00 1182358 7f69b740a000-7f69b740b000 r–p 00016000 fd:00 1182358 7f69b740b000-7f69b740c000 rw-p 00017000 fd:00 1182358 7f69b740c000-7f69b7410000 rw-p 00000000 00:00 0
7f69b7410000-7f69b744b000 r-xp 00000000 fd:00 1359859 7f69b744b000-7f69b764a000 —p 0003b000 fd:00 1359859 7f69b764a000-7f69b764b000 r–p 0003a000 fd:00 1359859 7f69b764b000-7f69b764c000 rw-p 0003b000 fd:00 1359859 7f69b764c000-7f69b7661000 r-xp 00000000 fd:00 847438 7f69b7661000-7f69b7860000 —p 00015000 fd:00 847438 7f69b7860000-7f69b7861000 r–p 00014000 fd:00 847438 7f69b7861000-7f69b7862000 rw-p 00015000 fd:00 847438 7f69b7862000-7f69b7887000 r-xp 00000000 fd:00 1254137 7f69b7887000-7f69b7a86000 —p 00025000 fd:00 1254137 7f69b7a86000-7f69b7a87000 r–p 00024000 fd:00 1254137 7f69b7a87000-7f69b7a88000 rw-p 00025000 fd:00 1254137 7f69b7a88000-7f69b7b89000 r-xp 00000000 fd:00 1170126 7f69b7b89000-7f69b7d88000 —p 00101000 fd:00 1170126 7f69b7d88000-7f69b7d89000 r–p 00100000 fd:00 1170126 7f69b7d89000-7f69b7d8a000 rw-p 00101000 fd:00 1170126 7f69b7d8a000-7f69b7ea9000 r-xp 00000000 fd:00 1359861 7f69b7ea9000-7f69b80a9000 —p 0011f000 fd:00 1359861 7f69b80a9000-7f69b80aa000 r–p 0011f000 fd:00 1359861 7f69b80aa000-7f69b80ac000 rw-p 00120000 fd:00 1359861 7f69b80ac000-7f69b847c000 r-xp 00000000 fd:00 17215653 7f69b847c000-7f69b867b000 —p 003d0000 fd:00 17215653 7f69b867b000-7f69b8685000 r–p 003cf000 fd:00 17215653 7f69b8685000-7f69b868e000 rw-p 003d9000 fd:00 17215653 7f69b868e000-7f69b8691000 rw-p 00000000 00:00 0
7f69b8691000-7f69b8704000 r-xp 00000000 fd:00 17408688 7f69b8704000-7f69b8903000 —p 00073000 fd:00 17408688 7f69b8903000-7f69b8904000 r–p 00072000 fd:00 17408688 7f69b8904000-7f69b8906000 rw-p 00073000 fd:00 17408688 7f69b8906000-7f69b8ab5000 r-xp 00000000 fd:00 17926362 7f69b8ab5000-7f69b8cb4000 —p 001af000 fd:00 17926362 7f69b8cb4000-7f69b8cb7000 r–p 001ae000 fd:00 17926362 7f69b8cb7000-7f69b8cc3000 rw-p 001b1000 fd:00 17926362 7f69b8cc3000-7f69b8d58000 rw-p 00000000 00:00 0
7f69b8d58000-7f69b8d7a000 r-xp 00000000 fd:00 7109 7f69b8d91000-7f69b8f69000 rw-p 00000000 00:00 0
7f69b8f76000-7f69b8f79000 rw-p 00000000 00:00 0
7f69b8f79000-7f69b8f7a000 r–p 00021000 fd:00 7109 7f69b8f7a000-7f69b8f7b000 rw-p 00022000 fd:00 7109 7f69b8f7b000-7f69b8f7c000 rw-p 00000000 00:00 0
7ffdeab43000-7ffdeab66000 rw-p 00000000 00:00 0 7ffdeab75000-7ffdeab77000 r-xp 00000000 00:00 0 ffffffffff600000-ffffffffff601000 r-xp 00000000 00:00 0 or corruption (out): 0x000000000047d1c0 ***
555]
/data/data065/nprovs/source/matchup/crtm_v2.4.0/crtm/src/Build/libsrc/test/check_crtm
/data/data065/nprovs/source/matchup/crtm_v2.4.0/crtm/src/Build/libsrc/test/check_crtm
/data/data065/nprovs/source/matchup/crtm_v2.4.0/crtm/src/Build/libsrc/test/check_crtm
[heap]
/usr/lib64/libfreebl3.so
/usr/lib64/libfreebl3.so
/usr/lib64/libfreebl3.so
/usr/lib64/libfreebl3.so
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/usr/lib64/libpcre.so.1.2.0
/usr/lib64/libpcre.so.1.2.0
/usr/lib64/libcrypt-2.17.so
/usr/lib64/libcrypt-2.17.so
/usr/lib64/libcrypt-2.17.so
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/usr/lib64/libssl.so.1.0.2k
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/usr/lib64/libgssapi_krb5.so.2.2
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/usr/lib64/libgssapi_krb5.so.2.2
/usr/lib64/libgssapi_krb5.so.2.2
/usr/lib64/libnspr4.so
/usr/lib64/libnspr4.so
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/usr/lib64/libplds4.so
/usr/lib64/libplds4.so
/usr/lib64/libplds4.so
/usr/lib64/libnssutil3.so
/usr/lib64/libnssutil3.so
/usr/lib64/libnssutil3.so
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/usr/lib64/libnss3.so
/usr/lib64/libnss3.so
/usr/lib64/libnss3.so
/usr/lib64/libsmime3.so
/usr/lib64/libsmime3.so
/usr/lib64/libsmime3.so
/usr/lib64/libsmime3.so
/usr/lib64/libssl3.so
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/usr/lib64/libssl3.so
/usr/lib64/libssh2.so.1.0.1
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/usr/lib64/libssh2.so.1.0.1
/usr/lib64/libssh2.so.1.0.1
/usr/lib64/libidn.so.11.6.11
/usr/lib64/libidn.so.11.6.11
/usr/lib64/libidn.so.11.6.11
/usr/lib64/libidn.so.11.6.11
/usr/lib64/liblzma.so.5.2.2
/usr/lib64/liblzma.so.5.2.2
/usr/lib64/liblzma.so.5.2.2
/usr/lib64/liblzma.so.5.2.2
/usr/lib64/libaec.so.0.0.10
/usr/lib64/libaec.so.0.0.10
/usr/lib64/libaec.so.0.0.10
/usr/lib64/libaec.so.0.0.10
/usr/lib64/libcurl.so.4.3.0
/usr/lib64/libcurl.so.4.3.0
/usr/lib64/libcurl.so.4.3.0
/usr/lib64/libcurl.so.4.3.0
/usr/lib64/libxml2.so.2.9.1
/usr/lib64/libxml2.so.2.9.1
/usr/lib64/libxml2.so.2.9.1
/usr/lib64/libxml2.so.2.9.1
/usr/lib64/libsz.so.2.0.1
/usr/lib64/libsz.so.2.0.1
/usr/lib64/libsz.so.2.0.1
/usr/lib64/libsz.so.2.0.1
/usr/lib64/libdl-2.17.so
/usr/lib64/libdl-2.17.so
/usr/lib64/libdl-2.17.so
/usr/lib64/libdl-2.17.so
/usr/lib64/libz.so.1.2.7
/usr/lib64/libz.so.1.2.7
/usr/lib64/libz.so.1.2.7
/usr/lib64/libz.so.1.2.7
/opt/test/lib/libhdf5_hl.so.100.1.6
/opt/test/lib/libhdf5_hl.so.100.1.6
/opt/test/lib/libhdf5_hl.so.100.1.6
/opt/test/lib/libhdf5_hl.so.100.1.6
/usr/lib64/libc-2.17.so
/usr/lib64/libc-2.17.so
/usr/lib64/libc-2.17.so
/usr/lib64/libc-2.17.so
/usr/lib64/libpthread-2.17.so
/usr/lib64/libpthread-2.17.so
/usr/lib64/libpthread-2.17.so
/usr/lib64/libpthread-2.17.so
/usr/lib64/libquadmath.so.0.0.0
/usr/lib64/libquadmath.so.0.0.0
/usr/lib64/libquadmath.so.0.0.0
/usr/lib64/libquadmath.so.0.0.0
/usr/lib64/libgcc_s-4.8.5-20150702.so.1
/usr/lib64/libgcc_s-4.8.5-20150702.so.1
/usr/lib64/libgcc_s-4.8.5-20150702.so.1
/usr/lib64/libgcc_s-4.8.5-20150702.so.1
/usr/lib64/libgomp.so.1.0.0
/usr/lib64/libgomp.so.1.0.0
/usr/lib64/libgomp.so.1.0.0
/usr/lib64/libgomp.so.1.0.0
/usr/lib64/libm-2.17.so
/usr/lib64/libm-2.17.so
/usr/lib64/libm-2.17.so
/usr/lib64/libm-2.17.so
/usr/lib64/libgfortran.so.3.0.0
/usr/lib64/libgfortran.so.3.0.0
/usr/lib64/libgfortran.so.3.0.0
/usr/lib64/libgfortran.so.3.0.0
/opt/test/lib/libhdf5.so.103.3.2
/opt/test/lib/libhdf5.so.103.3.2
/opt/test/lib/libhdf5.so.103.3.2
/opt/test/lib/libhdf5.so.103.3.2
/opt/test/lib/libnetcdff.so.7.1.0
/opt/test/lib/libnetcdff.so.7.1.0
/opt/test/lib/libnetcdff.so.7.1.0
/opt/test/lib/libnetcdff.so.7.1.0
/opt/test/lib/libnetcdf.so.19.2.1
/opt/test/lib/libnetcdf.so.19.2.1
/opt/test/lib/libnetcdf.so.19.2.1
/opt/test/lib/libnetcdf.so.19.2.1
/usr/lib64/ld-2.17.so
/usr/lib64/ld-2.17.so
/usr/lib64/ld-2.17.so
[stack]
[vdso]
[vsyscall]

Program received signal SIGABRT: Process abort signal.

Backtrace for this error:
#0 0x7F69B7DA36D7
#1 0x7F69B7DA3D1E
#2 0x7F69B6E5C3FF
#3 0x7F69B6E5C387
#4 0x7F69B6E5DA77
#5 0x7F69B6E9EF66
#6 0x7F69B6EA7328
#7 0x47D35F in __crtm_forward_module_MOD_crtm_forward._omp_fn.1 at CRTM_Forward_Module.f90:356 (discriminator 9)
#8 0x47F271 in crtm_forward_module_MOD_crtm_forward at CRTM_Forward_Module.f90:363
#9 0x410275 in MAIN at check_crtm.F90:336 (discriminator 1)
/bin/sh: line 11: 32200 Aborted ./check_crtm

TEST FAILED!

========================================

StegmannJCSDA · March 15, 2023, 5:34pm

Hello @muzi, welcome to the forum.
In general we are moving away from supporting the legacy build system, but in either case the backtrace says that the error occured at the following line in the CRTM forward module:

    WRITE(6,'("   Using",i3," OpenMP threads =",i3," for profiles and",i3," for channels.")') &
         n_omp_threads, n_profile_threads, n_channel_threads

Can you check if you have configured OpenMP correctly?

muzi · March 15, 2023, 6:25pm

Hey Stegmann, thanks for your response. I’m seeing libgomp already present on the system. I’ve also yum installed openmpi and openmpi-devel, however ‘make check’ is still failing with the same errors it appears. Not seeing mention of openMP in the user guide. What further configuration is required?

StegmannJCSDA · March 15, 2023, 7:18pm

Normally it should work without any further configuration, assuming that this is the actual problem.
My recommendation is to try a simple OpenMP program and check if it runs.

muzi · March 16, 2023, 7:16pm

We’ve been able to confirm that our OpenMP install is working on a simple level. Have also asked the user if they’d be willing to use the Python install method. Thanks, Kyle

muzi · March 16, 2023, 7:31pm

Running check_crtm once more and it ran for much longer than previously, and appeared to be properly testing. Now it’s back to failing quickly. We then ran the script through valgrind and it’s showing the following:

Calling the CRTM functions for cris399_npp…
==13454== Thread 8:
==13454== Conditional jump or move depends on uninitialised value(s)
==13454== at 0x47D349: __crtm_forward_module_MOD_crtm_forward._omp_fn.1 (CRTM_Forward_Module.f90:356)
==13454== by 0x611D404: ??? (in /usr/lib64/libgomp.so.1.0.0)
==13454== by 0x6786EA4: start_thread (in /usr/lib64/libpthread-2.17.so)
==13454== by 0x6A99B0C: clone (in /usr/lib64/libc-2.17.so)
==13454==
==13454== Conditional jump or move depends on uninitialised value(s)
==13454== at 0x47D356: __crtm_forward_module_MOD_crtm_forward._omp_fn.1 (CRTM_Forward_Module.f90:356)
==13454== by 0x611D404: ??? (in /usr/lib64/libgomp.so.1.0.0)
==13454== by 0x6786EA4: start_thread (in /usr/lib64/libpthread-2.17.so)
==13454== by 0x6A99B0C: clone (in /usr/lib64/libc-2.17.so)
==13454==

StegmannJCSDA · March 20, 2023, 6:17pm

Ok. I recommend trying the ecbuild build. As I mentioned, we don’t really support check_crtm anymore.

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Check_crtm make check failure

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