I am trying to build JEDI-SKYLAB 5.0 in my institutes HPC which is not included in preconfigured sites. The OS in this HPC is CentOS Linux release 7.9.2009. Before build JEDI, I am trying to build spack-stack environment following the instruction below.
The modules I loaded for this task are:
cmake/3.26.3 gcc/11.3.0
ompi/4.1.5/gnu-11.3.0
bzip2/1.0.6
texlive
tcltk/8.4.19
python3/3.9.3_anaconda2021.11_mamba
I was able to installed it sucessfully but when I run command ‘spack stack setup-meta-modules’ then I got an error.
The error is :
Error: local variable ‘package_name’ referenced before assignment
I am copying the log output here:
[skylab-5.0.0] ukumarda@ln0005 [~/spack-stack-1.4.0] % spack stack setup-meta-modules
Configuring basic directory information …
… script directory: /panfs/jay/groups/15/milletd/ukumarda/spack-stack-1.4.0/spack/lib/jcsda-emc/spack-stack/stack
… base directory: /panfs/jay/groups/15/milletd/ukumarda/spack-stack-1.4.0/spack/lib/jcsda-emc/spack-stack
… spack directory: /panfs/jay/groups/15/milletd/ukumarda/spack-stack-1.4.0/spack
Configuring active spack environment …
… environment directory: /panfs/jay/groups/15/milletd/ukumarda/spack-stack-1.4.0/envs/skylab-5.0.0
Parsing spack environment main config …
… install directory: /panfs/jay/groups/15/milletd/ukumarda/spack-stack-1.4.0/envs/skylab-5.0.0/install
Parsing spack environment modules config …
… configured to use tcl modules
… module directory: /panfs/jay/groups/15/milletd/ukumarda/spack-stack-1.4.0/envs/skylab-5.0.0/install/modulefiles
Parsing spack environment package config …
… list of possible compilers: ‘[‘gcc@11.3.0’, ‘gcc’, ‘intel’, ‘pgi’, ‘clang’, ‘xl’, ‘nag’, ‘fj’, ‘aocc’]’
… list of possible mpi providers: ‘[‘openmpi@4.1.5’, ‘openmpi’, ‘mpich’]’
[‘gcc’, ‘Core’, ‘module-index.yaml’]
… stack compilers: ‘{‘gcc’: [‘11.3.0’, ‘11.3.0’]}’
… stack mpi providers: ‘{}’
… core compilers: [‘gcc@4.6’]
Preparing meta module directory …
… meta module directory : /panfs/jay/groups/15/milletd/ukumarda/spack-stack-1.4.0/envs/skylab-5.0.0/install/modulefiles/Core
Creating compiler modules …
… configuring stack compiler gcc@11.3.0
… … CC : /common/software/install/migrated/gcc/11.3.0/bin/gcc
… … CXX : /common/software/install/migrated/gcc/11.3.0/bin/g++
… … F77 : /common/software/install/migrated/gcc/11.3.0/bin/gfortran
… … FC’ : /common/software/install/migrated/gcc/11.3.0/bin/gfortran
… … COMPFLAGS:
… … MODULELOADS:
… … MODULEPREREQS:
… … MODULEPATH : /panfs/jay/groups/15/milletd/ukumarda/spack-stack-1.4.0/envs/skylab-5.0.0/install/modulefiles/gcc/11.3.0
… … removing compiler prefices from tcl modulefiles in /panfs/jay/groups/15/milletd/ukumarda/spack-stack-1.4.0/envs/skylab-5.0.0/install/modulefiles/gcc/11.3.0
… … … removing compiler prefices in /panfs/jay/groups/15/milletd/ukumarda/spack-stack-1.4.0/envs/skylab-5.0.0/install/modulefiles/gcc/11.3.0/antlr/2.7.7
… … … removing compiler prefices in /panfs/jay/groups/15/milletd/ukumarda/spack-stack-1.4.0/envs/skylab-5.0.0/install/modulefiles/gcc/11.3.0/bacio/2.4.1
… … … removing compiler prefices in /panfs/jay/groups/15/milletd/ukumarda/spack-stack-1.4.0/envs/skylab-5.0.0/install/modulefiles/gcc/11.3.0/ca-certificates-mozilla/2023-01-10
… … … removing compiler prefices in /panfs/jay/groups/15/milletd/ukumarda/spack-stack-1.4.0/envs/skylab-5.0.0/install/modulefiles/gcc/11.3.0/cmake/3.26.3
… … … removing compiler prefices in /panfs/jay/groups/15/milletd/ukumarda/spack-stack-1.4.0/envs/skylab-5.0.0/install/modulefiles/gcc/11.3.0/double-conversion/3.1.5
… … … removing compiler prefices in /panfs/jay/groups/15/milletd/ukumarda/spack-stack-1.4.0/envs/skylab-5.0.0/install/modulefiles/gcc/11.3.0/eigen/3.4.0
… … … removing compiler prefices in /panfs/jay/groups/15/milletd/ukumarda/spack-stack-1.4.0/envs/skylab-5.0.0/install/modulefiles/gcc/11.3.0/g2tmpl/1.10.2
… … … removing compiler prefices in /panfs/jay/groups/15/milletd/ukumarda/spack-stack-1.4.0/envs/skylab-5.0.0/install/modulefiles/gcc/11.3.0/git/1.8.3.1
… … … removing compiler prefices in /panfs/jay/groups/15/milletd/ukumarda/spack-stack-1.4.0/envs/skylab-5.0.0/install/modulefiles/gcc/11.3.0/gmake/3.82
… … … removing compiler prefices in /panfs/jay/groups/15/milletd/ukumarda/spack-stack-1.4.0/envs/skylab-5.0.0/install/modulefiles/gcc/11.3.0/gperf/3.1
… … … removing compiler prefices in /panfs/jay/groups/15/milletd/ukumarda/spack-stack-1.4.0/envs/skylab-5.0.0/install/modulefiles/gcc/11.3.0/gsl/2.7.1
… … … removing compiler prefices in /panfs/jay/groups/15/milletd/ukumarda/spack-stack-1.4.0/envs/skylab-5.0.0/install/modulefiles/gcc/11.3.0/gsl-lite/0.37.0
… … … removing compiler prefices in /panfs/jay/groups/15/milletd/ukumarda/spack-stack-1.4.0/envs/skylab-5.0.0/install/modulefiles/gcc/11.3.0/jedi-cmake/1.4.0
… … … removing compiler prefices in /panfs/jay/groups/15/milletd/ukumarda/spack-stack-1.4.0/envs/skylab-5.0.0/install/modulefiles/gcc/11.3.0/json-c/0.16
… … … removing compiler prefices in /panfs/jay/groups/15/milletd/ukumarda/spack-stack-1.4.0/envs/skylab-5.0.0/install/modulefiles/gcc/11.3.0/libmd/1.0.4
… … … removing compiler prefices in /panfs/jay/groups/15/milletd/ukumarda/spack-stack-1.4.0/envs/skylab-5.0.0/install/modulefiles/gcc/11.3.0/libxcrypt/4.4.33
… … … removing compiler prefices in /panfs/jay/groups/15/milletd/ukumarda/spack-stack-1.4.0/envs/skylab-5.0.0/install/modulefiles/gcc/11.3.0/libyaml/0.2.5
… … … removing compiler prefices in /panfs/jay/groups/15/milletd/ukumarda/spack-stack-1.4.0/envs/skylab-5.0.0/install/modulefiles/gcc/11.3.0/json/3.10.5
… … … removing compiler prefices in /panfs/jay/groups/15/milletd/ukumarda/spack-stack-1.4.0/envs/skylab-5.0.0/install/modulefiles/gcc/11.3.0/openjpeg/2.3.1
… … … removing compiler prefices in /panfs/jay/groups/15/milletd/ukumarda/spack-stack-1.4.0/envs/skylab-5.0.0/install/modulefiles/gcc/11.3.0/patchelf/0.17.2
… … … removing compiler prefices in /panfs/jay/groups/15/milletd/ukumarda/spack-stack-1.4.0/envs/skylab-5.0.0/install/modulefiles/gcc/11.3.0/pcre2/10.42
… … … removing compiler prefices in /panfs/jay/groups/15/milletd/ukumarda/spack-stack-1.4.0/envs/skylab-5.0.0/install/modulefiles/gcc/11.3.0/pkg-config/0.27.1
… … … removing compiler prefices in /panfs/jay/groups/15/milletd/ukumarda/spack-stack-1.4.0/envs/skylab-5.0.0/install/modulefiles/gcc/11.3.0/re2c/2.2
… … … removing compiler prefices in /panfs/jay/groups/15/milletd/ukumarda/spack-stack-1.4.0/envs/skylab-5.0.0/install/modulefiles/gcc/11.3.0/sigio/2.3.2
… … … removing compiler prefices in /panfs/jay/groups/15/milletd/ukumarda/spack-stack-1.4.0/envs/skylab-5.0.0/install/modulefiles/gcc/11.3.0/sp/2.3.3
… … … removing compiler prefices in /panfs/jay/groups/15/milletd/ukumarda/spack-stack-1.4.0/envs/skylab-5.0.0/install/modulefiles/gcc/11.3.0/tar/1.26
… … … removing compiler prefices in /panfs/jay/groups/15/milletd/ukumarda/spack-stack-1.4.0/envs/skylab-5.0.0/install/modulefiles/gcc/11.3.0/util-linux-uuid/2.38.1
… … … removing compiler prefices in /panfs/jay/groups/15/milletd/ukumarda/spack-stack-1.4.0/envs/skylab-5.0.0/install/modulefiles/gcc/11.3.0/util-macros/1.19.3
… … … removing compiler prefices in /panfs/jay/groups/15/milletd/ukumarda/spack-stack-1.4.0/envs/skylab-5.0.0/install/modulefiles/gcc/11.3.0/w3nco/2.4.1
… … … removing compiler prefices in /panfs/jay/groups/15/milletd/ukumarda/spack-stack-1.4.0/envs/skylab-5.0.0/install/modulefiles/gcc/11.3.0/wget/1.14
… … … removing compiler prefices in /panfs/jay/groups/15/milletd/ukumarda/spack-stack-1.4.0/envs/skylab-5.0.0/install/modulefiles/gcc/11.3.0/zlib/1.2.13
… … … removing compiler prefices in /panfs/jay/groups/15/milletd/ukumarda/spack-stack-1.4.0/envs/skylab-5.0.0/install/modulefiles/gcc/11.3.0/zstd/1.5.2
… writing /panfs/jay/groups/15/milletd/ukumarda/spack-stack-1.4.0/envs/skylab-5.0.0/install/modulefiles/Core/stack-gcc/11.3.0
==> Error: local variable ‘package_name’ referenced before assignment